Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022987.1 Corchorus olitorius cultivar O-4 contig23020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41729

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
976--1288
162
1.9
162
94
0
545
36
10
11
41
1.76
2807--2834
12
2.3
12
100
0
56
39
0
25
35
1.56
2926--2969
22
1.9
23
86
9
63
47
15
27
9
1.76
5206--5253
14
3.5
14
72
16
55
60
14
18
6
1.55
5207--5258
27
1.9
27
100
0
104
61
13
19
5
1.52
5255--5286
15
2.2
14
94
5
55
65
15
6
12
1.44
8134--8187
14
3.5
14
73
22
54
59
12
18
9
1.60
8138--8196
17
3.5
17
74
21
70
61
11
16
10
1.57
8133--8201
33
2.1
33
100
0
138
56
13
18
11
1.66
13265--13318
19
2.6
21
77
19
60
38
18
3
38
1.69
17928--17961
2
17.5
2
93
6
61
50
0
0
50
1.00
18207--18235
12
2.5
12
94
5
51
27
6
0
65
1.18
24319--24592
137
2.0
137
94
0
476
32
12
30
24
1.92
24603--25024
230
1.8
230
97
0
799
33
16
27
22
1.95
26331--27255
395
2.3
395
93
0
1582
24
19
30
25
1.98
27449--27878
214
2.0
214
92
0
709
27
31
22
19
1.97
29221--29282
14
4.5
14
82
13
76
40
9
9
40
1.71
29528--29571
6
7.3
6
85
10
63
84
2
13
0
0.73
29528--29568
13
3.3
13
86
6
59
85
2
12
0
0.70
29528--29571
19
2.4
18
88
7
63
84
2
13
0
0.73
29933--30018
6
14.8
6
75
7
63
73
2
23
1
1.02
29963--30003
14
2.8
15
82
13
50
80
0
19
0
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36368--36407
20
2.0
20
100
0
80
60
0
10
30
1.30
39963--40020
29
1.9
30
82
6
73
75
1
5
17
1.06
40056--40176
38
3.3
37
69
23
101
14
35
39
10
1.80
40043--40184
73
1.9
73
92
0
239
13
36
38
11
1.80

Tables:   1

The End!