Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022989.1 Corchorus olitorius cultivar O-4 contig23022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 968

Length: 1614
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33


Found at i:899 original size:15 final size:15

Alignment explanation


    Indices: 856--899  Score: 61
    Period size: 15  Copynumber: 2.9  Consensus size: 15

        846 TGGTAGAGAG

                           
        856 GAAATGGGAAGGAAA
          1 GAAATGGGAAGGAAA

                *   **     
        871 GAAAAGGGGGGGAAA
          1 GAAATGGGAAGGAAA

                          
        886 GAAATGGGAAGGAA
          1 GAAATGGGAAGGAA

        900 GGAGAAGACT


Statistics
Matches: 23,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.50, C:0.00, G:0.45, T:0.05


Consensus pattern (15 bp):   
GAAATGGGAAGGAAA
Done.