Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002299.1 Corchorus olitorius cultivar O-4 contig02299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Found at i:999 original size:18 final size:18

Alignment explanation


    Indices: 976--1011  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        966 TTCTAATTTC

                              
        976 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

                              
        994 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

       1012 ATAGTATGAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50


Consensus pattern (18 bp):   
TATGTGTATTAAATTACT

Found at i:1073 original size:38 final size:39

Alignment explanation


    Indices: 996--1074  Score: 142
    Period size: 40  Copynumber: 2.0  Consensus size: 39

        986 AAATTACTTA

                                                    
        996 TGTGTATTAAATTACTATAGTATGATATATATATCTTTTC
          1 TGTGTATTAAATTACTATAGTATGATATATATA-CTTTTC

                                                   
       1036 TGTGTATTAAATTACTATAGTATGATATATATA-TTTTC
          1 TGTGTATTAAATTACTATAGTATGATATATATACTTTTC

             
       1074 T
          1 T

       1075 TTTTTTATTT


Statistics
Matches: 39,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
  38    6  0.15
  40   33  0.85

ACGTcount: A:0.33, C:0.06, G:0.10, T:0.51


Consensus pattern (39 bp):   
TGTGTATTAAATTACTATAGTATGATATATATACTTTTC
Done.