Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022992.1 Corchorus olitorius cultivar O-4 contig23025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54010

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4444--4651
111
1.9
111
80
2
247
37
20
25
16
1.93
4805--4908
54
1.9
54
94
0
181
43
21
20
15
1.88
13514--13547
15
2.3
15
89
0
50
50
29
2
17
1.61
16143--16199
30
1.9
30
89
3
89
26
14
19
40
1.89
17395--17429
18
1.9
18
88
0
52
37
2
11
48
1.54
19042--19108
21
3.2
21
68
16
66
52
14
4
28
1.62
19175--19289
57
2.0
57
94
1
205
40
1
24
33
1.66
20783--21056
64
4.3
63
93
4
455
51
4
11
33
1.58
33617--33748
31
4.3
31
74
1
115
34
26
22
16
1.95
35617--35674
28
2.1
28
90
0
89
53
3
1
41
1.28
45243--45398
51
3.1
50
61
14
115
27
23
23
25
2.00
45181--45859
99
6.8
99
90
4
1062
25
23
23
26
2.00
45181--45859
200
3.4
201
91
3
1083
25
23
23
26
2.00

Tables:   1

The End!