Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022998.1 Corchorus olitorius cultivar O-4 contig23031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48119

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1971--2035
31
2.2
31
86
5
89
26
21
15
36
1.93
2345--2395
25
2.0
25
100
0
102
50
15
15
17
1.78
2717--2781
31
2.2
30
80
5
78
36
13
21
27
1.92
15028--15060
17
1.9
17
88
11
50
45
0
9
45
1.35
19493--19556
3
21.3
3
96
0
119
32
0
1
65
1.02
20226--20274
24
2.0
24
96
0
89
51
0
24
24
1.49
21390--21440
21
2.4
21
81
18
61
58
0
0
41
0.98
21392--21440
25
2.0
25
84
8
64
59
0
0
40
0.98
25765--25854
5
18.2
5
82
9
98
41
3
1
54
1.24
26078--26158
39
2.0
40
92
2
137
50
8
3
37
1.51
26239--26649
203
2.0
203
95
2
738
36
10
9
44
1.70
27164--27233
36
1.9
36
91
0
113
60
8
10
21
1.55
30101--30160
2
32.0
2
83
12
83
46
0
1
51
1.10
30126--30170
10
4.5
10
91
0
54
48
0
8
42
1.34
34616--34672
28
2.0
28
83
6
71
38
10
5
45
1.61
35110--35167
29
2.1
27
87
6
80
24
3
12
60
1.47
37377--37404
1
28.0
1
100
0
56
0
0
0
100
0.00
42727--42782
14
3.8
14
80
13
58
14
5
28
51
1.64

Tables:   1

The End!