Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022999.1 Corchorus olitorius cultivar O-4 contig23032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17721

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
782--851
36
1.9
36
91
0
113
60
8
10
21
1.55
2112--2223
58
1.9
58
90
1
181
32
20
14
33
1.92
6535--6565
3
10.3
3
100
0
62
67
0
0
32
0.91
7396--7482
31
2.9
30
85
13
108
26
22
11
39
1.88
7487--7556
29
2.3
30
78
9
81
41
8
24
25
1.83
9883--9918
19
1.9
19
94
5
65
36
19
5
38
1.75
10145--10209
33
2.0
33
87
6
96
18
43
30
7
1.78
12865--12892
11
2.5
11
100
0
56
46
7
0
46
1.30
12920--12975
18
2.9
18
80
20
60
42
12
10
33
1.77
12920--12995
40
1.9
40
86
5
109
42
11
11
34
1.78
12957--13084
22
5.9
22
72
10
84
39
18
10
32
1.84
13202--13280
21
3.7
20
73
11
59
40
12
7
39
1.72
13192--13362
22
7.8
21
65
19
55
34
15
9
39
1.81
13700--13811
56
2.0
56
96
0
206
37
10
14
37
1.81
14547--14901
118
3.0
118
90
2
559
34
8
22
34
1.84
16753--16783
16
1.9
16
93
0
53
12
6
19
61
1.53
17356--17419
16
4.1
15
72
23
53
60
6
9
23
1.50

Tables:   1

The End!