Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023001.1 Corchorus olitorius cultivar O-4 contig23034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44543

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4973--5005
16
2.0
17
94
5
59
48
0
9
42
1.35
6501--6540
2
20.0
2
100
0
80
0
0
50
50
1.00
6597--6662
2
34.5
2
88
8
84
0
0
57
42
0.98
9099--9151
16
3.5
15
80
17
56
49
16
5
28
1.69
12408--12471
29
2.3
29
86
5
87
37
26
20
15
1.92
21024--21062
5
7.8
5
83
11
53
0
41
0
58
0.98
21024--21062
15
2.6
15
95
0
69
0
41
0
58
0.98
22324--22377
25
2.1
26
89
3
83
40
0
0
59
0.98
24733--24773
2
20.5
2
94
0
73
48
0
2
48
1.14
34670--35068
130
3.0
127
85
6
480
25
29
18
27
1.98
40957--41034
16
4.9
16
75
12
63
14
14
33
38
1.86
42015--42218
22
9.3
22
73
6
119
38
19
10
31
1.86
42015--42218
66
3.1
65
74
7
191
38
19
10
31
1.86
42048--42502
22
20.5
22
68
12
135
35
17
10
36
1.84

Tables:   1

The End!