Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023002.1 Corchorus olitorius cultivar O-4 contig23035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2942
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37


Found at i:1010 original size:31 final size:31

Alignment explanation


    Indices: 972--1049  Score: 138
    Period size: 31  Copynumber: 2.5  Consensus size: 31

        962 GCGTGACAGA

                                           
        972 TTTGGTCCTGATTTGGACAAAACATGAAAGG
          1 TTTGGTCCTGATTTGGACAAAACATGAAAGG

                         *                 
       1003 TTTGGTCCTGATTCGGACAAAACATGAAAGG
          1 TTTGGTCCTGATTTGGACAAAACATGAAAGG

               *            
       1034 TTTTGTCCTGATTTGG
          1 TTTGGTCCTGATTTGG

       1050 GCAATTAACC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   44  1.00

ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33


Consensus pattern (31 bp):   
TTTGGTCCTGATTTGGACAAAACATGAAAGG
Done.