Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023010.1 Corchorus olitorius cultivar O-4 contig23043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38788

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--67
2
16.0
2
93
6
55
48
0
51
0
1.00
382--420
6
6.8
6
97
2
64
0
0
12
87
0.55
5210--5259
25
2.0
25
92
0
82
38
18
30
14
1.89
7983--8017
2
17.5
2
100
0
70
51
0
0
48
1.00
8427--8514
45
2.0
43
89
6
133
42
22
4
30
1.74
12333--12363
14
2.2
14
100
0
62
29
6
6
58
1.48
16945--16983
5
7.2
5
83
16
51
53
0
20
25
1.45
20851--20888
19
2.0
19
85
10
51
15
7
26
50
1.72
23390--23415
13
2.0
13
100
0
52
15
15
15
53
1.73
25299--25385
40
2.1
41
89
2
131
26
14
11
47
1.79
32754--32833
22
3.6
22
85
5
108
45
16
5
33
1.69

Tables:   1

The End!