Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023012.1 Corchorus olitorius cultivar O-4 contig23045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15051
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27


Found at i:1920 original size:27 final size:27

Alignment explanation


    Indices: 1877--1929  Score: 90
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1867 ACCAGGGGCA

                                       
       1877 ACCCCCCCAGGGATACTGCTAGTCGCG
          1 ACCCCCCCAGGGATACTGCTAGTCGCG

                                       
       1904 ACCCCCCCA-GGAGTACTGCTAGTCGC
          1 ACCCCCCCAGGGA-TACTGCTAGTCGC

       1930 CCCCGTTTTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  26    3  0.12
  27   22  0.88

ACGTcount: A:0.19, C:0.42, G:0.25, T:0.15


Consensus pattern (27 bp):   
ACCCCCCCAGGGATACTGCTAGTCGCG

Found at i:4655 original size:22 final size:22

Alignment explanation


    Indices: 4623--4671  Score: 71
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       4613 GGAAACGACA

                                  
       4623 CTTCGAATTTCAAGGCACGTCG
          1 CTTCGAATTTCAAGGCACGTCG

                  *    *          
       4645 CTTCGAGTTTCGAGGCACGTCG
          1 CTTCGAATTTCAAGGCACGTCG

            *    
       4667 TTTCG
          1 CTTCG

       4672 GATTCTGGAA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.16, C:0.27, G:0.27, T:0.31


Consensus pattern (22 bp):   
CTTCGAATTTCAAGGCACGTCG
Done.