Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023013.1 Corchorus olitorius cultivar O-4 contig23046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64524

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8468--8505
11
3.5
11
85
10
51
57
2
0
39
1.12
8827--8887
31
2.1
31
84
9
83
32
1
9
55
1.42
9204--9275
29
2.6
28
86
4
92
45
15
5
33
1.69
17359--17387
14
2.0
15
93
6
51
20
20
17
41
1.90
17684--17708
13
1.9
13
100
0
50
64
16
0
20
1.30
22009--22078
36
1.9
36
88
0
104
22
11
8
57
1.61
22589--22993
203
2.0
200
96
1
738
43
8
11
36
1.71
23402--23458
6
9.0
6
86
9
78
50
0
14
35
1.42
23401--23458
20
3.0
19
87
10
82
50
0
13
36
1.42
23415--23468
26
2.1
26
82
0
63
50
1
16
31
1.56
26793--26861
33
2.1
33
97
0
129
46
11
14
27
1.79
30039--30127
46
1.9
46
90
0
142
22
20
29
28
1.98
44195--44228
17
2.0
17
100
0
68
23
5
17
52
1.66
48368--48468
49
2.1
49
90
3
159
44
16
5
32
1.72
51702--51741
20
2.0
20
95
0
71
40
12
10
37
1.77
52999--53171
22
7.8
22
76
10
131
43
11
12
32
1.78
55269--55307
4
9.8
4
83
10
53
23
2
0
74
0.94
56732--56764
11
3.1
11
95
4
59
0
30
54
15
1.41
56936--56986
22
2.2
24
83
16
72
41
0
0
58
0.98
56936--56984
25
2.0
25
84
8
64
40
0
0
59
0.98
57349--57376
5
5.6
5
100
0
56
0
35
0
64
0.94
58576--58832
85
3.0
85
99
0
505
33
9
24
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64500--64524
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!