Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023016.1 Corchorus olitorius cultivar O-4 contig23049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5790
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:2790 original size:23 final size:23

Alignment explanation


    Indices: 2763--2819  Score: 114
    Period size: 23  Copynumber: 2.5  Consensus size: 23

       2753 TTTCAACCTA

                                   
       2763 GCCCCAACTTGAGGGGTAAGTTG
          1 GCCCCAACTTGAGGGGTAAGTTG

                                   
       2786 GCCCCAACTTGAGGGGTAAGTTG
          1 GCCCCAACTTGAGGGGTAAGTTG

                       
       2809 GCCCCAACTTG
          1 GCCCCAACTTG

       2820 GAGTTCGTCA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   34  1.00

ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21


Consensus pattern (23 bp):   
GCCCCAACTTGAGGGGTAAGTTG
Done.