Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023022.1 Corchorus olitorius cultivar O-4 contig23055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40309

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
451--503
21
2.5
20
81
3
61
20
13
16
49
1.79
3954--4019
26
2.5
27
83
11
75
68
1
21
9
1.26
5352--5504
55
2.8
54
78
8
177
28
16
20
35
1.94
5334--5496
54
3.0
54
79
7
159
27
15
21
35
1.93
5525--6190
35
19.2
35
89
1
932
27
12
20
39
1.88
5525--6190
69
9.6
69
90
1
931
27
12
20
39
1.88
5525--6190
104
6.4
105
89
2
941
27
12
20
39
1.88
8459--8538
22
3.5
22
80
13
74
42
7
10
40
1.67
8599--8650
22
2.4
22
83
3
70
42
7
11
38
1.70
8482--8674
44
4.4
44
72
10
146
42
9
12
35
1.75
8775--8933
22
7.5
21
70
14
114
39
8
14
37
1.77
8775--8938
44
3.9
43
74
9
149
39
8
14
37
1.77
8778--8930
66
2.5
60
81
10
148
40
9
15
35
1.79
11117--11149
2
17.0
2
87
6
50
48
0
0
51
1.00
11987--12102
57
2.0
57
93
0
196
37
3
26
31
1.73
19033--19065
14
2.4
14
85
5
50
0
9
12
78
0.95
19809--19841
15
2.1
16
88
5
50
48
9
0
42
1.35
21320--21377
19
2.9
19
87
5
80
36
12
22
29
1.90
23704--23756
19
2.7
19
79
5
52
39
7
7
45
1.61
23840--23866
2
13.5
2
100
0
54
48
0
0
51
1.00
29725--29761
19
1.9
19
94
0
65
29
18
13
37
1.90

Tables:   1

The End!