Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023025.1 Corchorus olitorius cultivar O-4 contig23058, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3983
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34


Found at i:3013 original size:27 final size:27

Alignment explanation


    Indices: 2975--3037  Score: 78
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       2965 CTAAATTTCC

                                          
       2975 ATTATTTTAATAATGG-AATAATTA-AAAT
          1 ATTA-TTTAATAATGGCAAT--TTAGAAAT

                                       
       3003 ATTATTTAATAATGGCAATTTAGAAAT
          1 ATTATTTAATAATGGCAATTTAGAAAT

                     
       3030 A-TATTTAA
          1 ATTATTTAA

       3038 AAAAAGGTAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 6
        0.85            0.00        0.15

Matches are distributed among these distances:
  26   10  0.30
  27   16  0.48
  28    7  0.21

ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43


Consensus pattern (27 bp):   
ATTATTTAATAATGGCAATTTAGAAAT
Done.