Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023026.1 Corchorus olitorius cultivar O-4 contig23059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33871

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1325--1468
72
2.0
72
98
0
279
46
22
6
25
1.75
1799--1825
11
2.5
11
100
0
54
33
7
7
51
1.58
9574--9632
30
2.0
30
89
0
91
38
11
11
37
1.79
11834--11873
2
19.5
2
94
5
71
47
0
2
50
1.14
12358--12432
31
2.4
31
80
10
89
18
25
20
36
1.95
15151--15205
25
2.2
24
90
9
85
49
7
21
21
1.74
16865--16901
19
1.9
19
100
0
74
16
18
10
54
1.71
17289--17323
4
9.2
4
93
6
56
0
20
0
80
0.72
20711--20779
34
2.1
32
91
5
111
57
4
23
14
1.55
21971--22003
16
2.1
16
94
0
57
30
15
24
30
1.95
23430--23506
33
2.2
33
80
11
84
23
11
45
19
1.83
30978--31012
12
2.9
12
91
0
52
0
17
42
40
1.49
33416--33516
41
2.5
41
100
0
202
23
16
33
25
1.96

Tables:   1

The End!