Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023028.1 Corchorus olitorius cultivar O-4 contig23061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69055

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
384--432
18
2.7
18
96
0
89
42
8
6
42
1.59
1327--1360
17
2.0
17
94
0
59
41
32
11
14
1.82
4810--4962
77
2.0
77
92
0
252
50
0
15
33
1.44
5459--5492
16
2.2
15
89
5
50
47
2
2
47
1.32
6271--6349
31
2.5
31
82
8
106
29
15
20
35
1.93
10721--10749
2
14.5
2
100
0
58
51
0
0
48
1.00
23216--23284
30
2.3
30
97
2
131
26
33
0
40
1.56
23288--23335
21
2.2
21
85
3
60
58
27
0
14
1.37
23622--23654
17
1.9
17
88
11
50
30
0
6
63
1.18
23811--23859
20
2.3
22
89
6
75
36
0
6
57
1.24
25677--25751
24
3.1
24
86
5
98
26
17
0
56
1.42
29005--29043
20
2.0
20
84
0
51
69
2
0
28
1.02
29199--29242
21
2.1
21
91
0
70
13
22
29
34
1.93
31412--31500
44
2.0
44
97
0
169
21
16
13
48
1.81
31819--31850
16
2.0
16
100
0
64
12
25
37
25
1.91
56992--57046
26
2.1
26
100
0
110
18
20
10
50
1.76
65818--65874
30
1.9
29
89
10
89
61
19
19
0
1.35
66723--66761
6
6.0
6
85
14
51
30
20
0
48
1.50
66849--67022
78
2.2
78
86
4
244
33
13
1
52
1.48
67548--67620
31
2.3
32
80
4
94
10
24
31
32
1.90
67934--67968
15
2.2
16
90
5
54
62
0
0
37
0.95
68773--68809
19
1.9
19
94
0
65
29
13
13
43
1.82

Tables:   1

The End!