Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023029.1 Corchorus olitorius cultivar O-4 contig23062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39596

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2522--2578
24
2.4
23
78
13
62
29
7
5
57
1.47
2531--2582
25
2.1
24
89
3
77
30
5
3
59
1.39
10816--10858
22
2.0
22
95
0
77
18
34
25
20
1.96
16207--16234
12
2.3
12
100
0
56
14
7
25
53
1.66
16792--16841
25
2.0
25
96
0
91
50
20
22
8
1.74
18164--18200
19
2.0
19
89
5
58
35
0
0
64
0.94
18170--18212
19
2.3
19
83
0
50
39
2
0
58
1.11
19068--19093
6
4.3
6
100
0
52
50
0
15
34
1.45
19413--19543
65
2.0
65
100
0
262
54
29
1
15
1.50
22537--22584
21
2.3
21
100
0
96
4
35
52
8
1.51
22751--22803
25
2.1
26
82
10
65
41
0
0
58
0.98
22721--22803
23
3.7
22
73
18
73
39
2
1
56
1.20
23645--23690
22
2.1
22
95
0
83
26
4
10
58
1.50
35055--35090
18
2.0
18
100
0
72
50
22
5
22
1.70
38504--38543
21
1.9
21
94
0
71
17
20
30
32
1.95
38685--38729
22
2.0
22
100
0
90
33
0
26
40
1.57

Tables:   1

The End!