genome.fa.s23032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023032.1 Corchorus olitorius cultivar O-4 contig23065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122892

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4964--5011	24	2.0	24	95	0	87	43	10	8	37	1.69
8002--8078	29	2.6	30	81	6	93	32	12	24	29	1.93
8979--9027	24	2.1	23	85	11	64	14	20	12	53	1.73
9871--10066	96	2.0	96	99	0	383	32	8	21	37	1.84
12079--12105	2	13.5	2	100	0	54	48	0	0	51	1.00
12160--12197	18	2.1	18	100	0	76	21	5	23	50	1.69
20523--20552	13	2.3	13	94	0	51	26	0	40	33	1.57
22856--22882	1	27.0	1	100	0	54	0	0	0	100	0.00
23524--23557	3	11.3	3	100	0	68	32	0	0	67	0.91
25483--25518	19	1.9	18	88	5	54	41	2	22	33	1.68
32307--32357	25	2.0	26	88	3	77	19	33	27	19	1.96
32820--32844	12	2.1	12	100	0	50	48	8	20	24	1.76
35011--35051	19	2.2	19	90	0	64	51	4	9	34	1.56
35905--35940	19	1.9	18	88	5	54	41	2	22	33	1.68
39215--39347	50	2.6	51	85	3	180	37	12	7	42	1.70
39262--39426	81	2.0	81	80	4	181	36	15	5	43	1.70
39343--39521	50	3.6	50	81	6	175	35	16	3	44	1.64
39525--39726	50	4.0	50	86	1	244	37	15	5	41	1.72
39957--39996	20	2.0	20	85	9	55	2	40	0	57	1.12
46525--46583	13	4.6	13	76	17	61	45	0	1	52	1.10
46526--46583	11	5.6	11	75	24	56	46	0	1	51	1.11
46526--46583	2	32.5	2	72	27	51	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46712--46736	10	2.5	10	100	0	50	0	32	0	68	0.90
56058--56107	24	2.1	24	84	0	64	12	30	42	16	1.84
61104--61157	26	2.1	26	89	3	83	18	20	3	57	1.55
61136--61235	33	2.9	33	81	10	105	28	18	3	51	1.61
61302--61560	67	3.9	64	80	11	231	29	18	0	51	1.50
61302--61566	31	7.9	35	78	14	249	29	18	0	51	1.49
61302--61566	102	2.7	103	79	11	295	29	18	0	51	1.49
61621--61791	21	8.1	20	74	19	129	19	21	5	53	1.65
61614--61822	42	5.0	41	81	8	217	20	21	5	53	1.64
61749--61830	35	2.4	34	79	6	101	23	19	4	52	1.65
63525--63663	31	4.5	31	85	0	170	20	23	23	32	1.98
66177--66221	12	3.6	12	84	6	54	33	20	13	33	1.91
83366--83445	29	2.7	29	84	3	88	27	17	13	41	1.87
83366--83429	31	2.1	29	85	5	83	31	15	14	39	1.87
83569--83663	31	3.1	30	92	4	154	43	12	14	29	1.83
84273--84512	126	1.9	126	83	3	313	34	11	1	53	1.45
84601--84635	7	5.0	7	92	0	52	80	0	14	5	0.89
84678--84772	32	3.1	32	90	6	151	33	13	11	41	1.81
84916--84989	29	2.5	29	86	4	94	43	14	18	22	1.87
86046--86078	11	3.0	11	100	0	66	63	9	0	27	1.24
87274--87318	15	2.8	17	90	10	76	71	13	6	8	1.31
92386--92445	22	2.7	22	75	14	61	68	3	11	16	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96473--96512	5	7.6	5	86	5	53	80	2	17	0	0.83
96504--96571	7	9.4	7	89	7	93	69	0	29	1	0.98
102243--102282	20	2.0	20	95	0	71	62	5	12	20	1.48
102263--103731	48	29.4	48	72	13	883	44	19	21	14	1.86
102256--103731	144	9.8	145	73	13	1051	44	19	21	14	1.86
102448--102589	68	2.1	68	90	2	223	49	16	19	15	1.80
102352--102685	164	2.0	164	88	1	490	46	18	20	14	1.84
102400--102616	116	1.9	116	90	1	346	46	18	20	14	1.84
102210--104298	260	8.1	258	79	8	1616	44	19	21	14	1.86
102708--102849	68	2.1	68	88	2	205	52	16	17	14	1.75
102636--102945	164	1.9	164	87	2	453	45	19	21	13	1.84
102660--102898	116	2.1	116	86	5	340	48	17	19	13	1.80
103446--103488	20	2.2	20	95	0	77	62	6	13	16	1.51
103398--103539	68	2.1	68	89	0	212	52	16	16	14	1.76
103351--103587	116	2.1	115	87	2	341	48	18	18	14	1.82
103303--103635	164	2.0	163	88	0	486	46	19	20	14	1.83
103706--103748	20	2.2	20	91	0	68	60	6	16	16	1.56
103658--103800	68	2.1	68	88	0	214	51	16	18	13	1.77
103562--104059	164	3.0	162	86	3	665	45	19	21	14	1.85
103726--103895	48	3.5	48	84	1	216	45	18	22	12	1.83
103610--103847	116	2.1	116	84	1	307	47	18	20	13	1.82
103774--104011	116	2.1	116	86	3	327	45	18	22	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103822--103963	68	2.1	68	90	2	223	48	16	20	14	1.81
103890--104107	48	4.5	48	87	1	312	45	19	19	15	1.85
103890--104298	96	4.1	95	75	14	345	44	20	21	14	1.86
103945--104271	164	2.0	164	90	2	514	45	19	20	14	1.85
103256--104298	212	4.9	212	81	5	1209	44	19	21	13	1.86
104041--104175	68	2.0	68	92	0	225	48	17	19	14	1.81
103986--104223	116	2.1	116	91	1	388	46	18	19	15	1.84
104109--104305	48	4.1	48	88	0	268	42	20	23	13	1.87
104938--105646	50	14.1	50	90	2	1053	39	14	3	43	1.62
104936--105646	201	3.5	200	90	1	1075	39	14	3	43	1.62
105479--105621	30	5.4	30	60	30	83	39	13	4	43	1.63
105509--105595	20	3.8	20	70	25	66	37	13	4	43	1.65
108088--108145	10	6.4	9	74	21	50	10	10	3	75	1.15
108094--108131	16	2.3	17	86	4	51	7	7	2	81	0.96
118717--118807	25	3.6	25	90	0	137	28	27	20	23	1.99
120244--120357	27	4.2	27	98	0	219	20	39	21	18	1.92
120418--120484	33	2.0	33	94	0	116	37	28	11	22	1.90
120417--120479	15	4.0	15	78	11	63	39	26	12	20	1.89
120427--120495	33	2.1	33	88	0	102	40	24	15	18	1.90

Tables:   1

The End!