Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023034.1 Corchorus olitorius cultivar O-4 contig23067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52333

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
622--650
9
3.3
9
95
4
51
34
20
0
44
1.52
2860--3081
111
2.0
111
98
0
426
23
22
21
31
1.98
14408--14443
19
1.9
18
88
5
54
33
22
2
41
1.68
14408--14454
11
4.7
10
80
17
53
31
21
6
40
1.78
18730--18765
18
2.1
18
89
5
56
38
11
5
44
1.63
19426--19465
16
2.6
14
88
11
53
57
20
10
12
1.63
19627--19666
6
6.7
6
88
0
62
82
0
15
2
0.77
27394--27442
20
2.6
19
87
9
66
75
0
22
2
0.90
27415--27467
17
3.2
16
84
10
63
77
0
20
1
0.87
27374--27460
20
4.2
20
76
5
57
77
0
16
6
0.98
30181--30316
50
2.7
50
90
1
211
34
13
33
19
1.90
32757--32885
49
2.7
48
79
5
127
27
17
7
47
1.75
33422--33517
36
2.7
36
75
6
95
29
41
18
10
1.84
33425--33505
18
4.5
18
71
0
63
32
43
16
8
1.78
34745--34811
15
4.5
15
79
7
73
41
26
19
11
1.86
34734--34811
30
2.6
30
89
4
113
41
23
21
14
1.89
37411--37544
49
2.8
49
84
6
159
26
17
6
50
1.70
39007--39047
21
2.0
20
85
4
55
14
9
2
73
1.19
44615--44696
31
2.7
30
77
9
78
34
13
20
31
1.91
44773--44800
2
14.0
2
100
0
56
50
0
0
50
1.00
48534--48562
2
14.5
2
100
0
58
48
0
0
51
1.00
50516--50845
41
7.8
42
84
7
427
20
10
26
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50514--50845
43
7.9
41
81
11
370
21
10
26
41
1.85
50514--50845
84
3.9
84
91
1
531
21
10
26
41
1.85

Tables:   1

The End!