Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023037.1 Corchorus olitorius cultivar O-4 contig23070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4794
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:474 original size:9 final size:9

Alignment explanation


    Indices: 460--484  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        450 CCGCCGACTA

                     
        460 GTCGGTTCG
          1 GTCGGTTCG

                     
        469 GTCGGTTCG
          1 GTCGGTTCG

                   
        478 GTCGGTT
          1 GTCGGTT

        485 TCAGCTTGAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.20, G:0.44, T:0.36


Consensus pattern (9 bp):   
GTCGGTTCG
Done.