Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023045.1 Corchorus olitorius cultivar O-4 contig23078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32772

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2168--2197
12
2.5
12
100
0
60
16
6
26
50
1.70
13230--13265
19
1.9
18
88
5
54
27
22
8
41
1.82
14109--14145
18
2.1
18
89
0
56
37
10
5
45
1.62
14483--14528
22
2.1
22
100
0
92
65
13
4
17
1.42
14808--14866
30
2.0
30
90
6
93
61
5
13
20
1.51
19426--19463
18
2.1
18
85
9
51
65
7
18
7
1.43
20046--20081
19
1.9
18
88
5
54
27
22
8
41
1.82
22565--22619
5
11.6
5
84
11
64
85
14
0
0
0.60
22570--22607
7
5.6
7
93
6
69
89
10
0
0
0.49
22567--22619
14
3.8
13
90
9
79
86
13
0
0
0.56
22570--22612
13
3.3
13
87
6
61
88
11
0
0
0.52
30226--30260
15
2.3
15
90
0
52
25
34
17
22
1.96
32512--32584
29
2.5
30
86
8
107
39
12
12
35
1.80

Tables:   1

The End!