Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023048.1 Corchorus olitorius cultivar O-4 contig23081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5905
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24


Found at i:560 original size:15 final size:15

Alignment explanation


    Indices: 505--554  Score: 82
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        495 TTTTCATTTA

                *          
        505 TTTAATATTCAGCAT
          1 TTTAGTATTCAGCAT

             *             
        520 TCTAGTATTCAGCAT
          1 TTTAGTATTCAGCAT

                           
        535 TTTAGTATTCAGCAT
          1 TTTAGTATTCAGCAT

                 
        550 TTTAG
          1 TTTAG

        555 ATTTCAAAGG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   32  1.00

ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46


Consensus pattern (15 bp):   
TTTAGTATTCAGCAT
Done.