Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023049.1 Corchorus olitorius cultivar O-4 contig23082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42257

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1984--2131
50
2.9
50
85
4
145
37
4
18
39
1.70
2014--2131
50
2.3
51
91
2
193
38
3
18
39
1.68
4613--4691
41
2.0
40
87
7
115
51
11
13
22
1.73
7824--7878
27
2.0
27
85
0
74
41
23
12
21
1.88
8294--8466
46
3.7
46
84
3
202
21
28
17
32
1.96
8493--9322
41
20.5
40
80
6
843
15
26
20
37
1.93
8493--9322
81
10.2
81
86
3
856
15
26
20
37
1.93
8493--9322
121
6.8
120
81
6
780
15
26
20
37
1.93
9465--9502
16
2.4
16
87
12
53
7
15
39
36
1.77
11141--11185
16
2.7
17
82
6
65
6
13
37
42
1.70
12814--12860
22
2.1
22
96
0
85
14
19
17
48
1.81
17491--17603
7
16.3
7
67
21
51
50
2
24
22
1.62
17496--17582
21
4.2
22
77
12
78
49
3
24
22
1.65
17537--17603
28
2.4
28
85
7
84
50
1
25
22
1.57
17569--17679
41
2.7
41
94
0
186
53
2
23
20
1.59
17593--17707
34
3.2
34
78
15
131
53
4
21
20
1.63
17637--17694
14
3.7
14
72
24
53
55
3
20
20
1.58
17718--17742
7
3.6
7
100
0
50
60
0
24
16
1.36
17559--17741
75
2.3
73
78
19
183
52
2
23
21
1.60
17685--17793
42
2.9
38
80
10
118
50
4
22
22
1.67
17718--17804
42
2.1
42
88
0
129
51
5
20
21
1.68
17839--17914
35
2.2
35
95
0
134
57
3
15
22
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17839--17935
35
2.8
35
89
6
126
56
6
16
20
1.61
17904--17988
26
3.4
24
80
15
75
60
4
18
16
1.53
30413--30438
5
5.2
5
100
0
52
38
38
23
0
1.55
30936--30967
12
2.7
12
100
0
64
53
31
15
0
1.43
38488--38558
34
2.1
34
89
0
106
25
4
23
46
1.70
38549--38594
21
2.1
22
88
4
67
34
13
23
28
1.92
41061--41092
16
2.0
16
93
0
55
59
0
6
34
1.23
41429--41461
14
2.3
15
89
5
50
51
3
0
45
1.16

Tables:   1

The End!