Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023050.1 Corchorus olitorius cultivar O-4 contig23083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 35501
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33


Found at i:7462 original size:26 final size:26

Alignment explanation


    Indices: 7432--7487  Score: 112
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       7422 CAAAGAATGA

                                      
       7432 CAAAACTACATTTCAATTTGTGACCT
          1 CAAAACTACATTTCAATTTGTGACCT

                                      
       7458 CAAAACTACATTTCAATTTGTGACCT
          1 CAAAACTACATTTCAATTTGTGACCT

                
       7484 CAAA
          1 CAAA

       7488 TCAAATCGTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   30  1.00

ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32


Consensus pattern (26 bp):   
CAAAACTACATTTCAATTTGTGACCT

Found at i:20668 original size:14 final size:14

Alignment explanation


    Indices: 20649--20679  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

      20639 TCTCTCCGTT

                          
      20649 CCTTTTTAATTGTC
          1 CCTTTTTAATTGTC

                          
      20663 CCTTTTTAATTGTC
          1 CCTTTTTAATTGTC

               
      20677 CCT
          1 CCT

      20680 CATATTTCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55


Consensus pattern (14 bp):   
CCTTTTTAATTGTC

Found at i:34563 original size:17 final size:17

Alignment explanation


    Indices: 34541--34573  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

      34531 TAATTAAGGC

                             
      34541 CGAAATTATTAATATTT
          1 CGAAATTATTAATATTT

                       *    
      34558 CGAAATTATTATTATT
          1 CGAAATTATTAATATT

      34574 ATTTCCATAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48


Consensus pattern (17 bp):   
CGAAATTATTAATATTT
Done.