Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023052.1 Corchorus olitorius cultivar O-4 contig23085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7634
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28


Found at i:5239 original size:17 final size:17

Alignment explanation


    Indices: 5217--5249  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       5207 TAATTAAGGC

                             
       5217 CGAAATTATTAATATTT
          1 CGAAATTATTAATATTT

                       *    
       5234 CGAAATTATTATTATT
          1 CGAAATTATTAATATT

       5250 ATTTCCATAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48


Consensus pattern (17 bp):   
CGAAATTATTAATATTT
Done.