Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023056.1 Corchorus olitorius cultivar O-4 contig23089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4849
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31


Found at i:1637 original size:3 final size:3

Alignment explanation


    Indices: 1629--1679  Score: 102
    Period size: 3  Copynumber: 17.0  Consensus size: 3

       1619 AATTTTACAT

                                                                           
       1629 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

               
       1677 TTA
          1 TTA

       1680 CACTAATTTC


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   48  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Found at i:3528 original size:30 final size:29

Alignment explanation


    Indices: 3485--3541  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       3475 TTAGGATTAG

                                         
       3485 TTATTTATGCTTTAATTTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
       3513 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

       3542 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT
Done.