genome.fa.s23058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023058.1 Corchorus olitorius cultivar O-4 contig23091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65480

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11445--11484	15	2.6	16	88	4	55	62	12	10	15	1.54
13391--13774	194	2.0	194	92	2	646	25	21	27	26	1.99
13780--13838	2	29.5	2	100	0	118	0	0	49	50	1.00
14761--14901	70	2.0	70	83	5	178	36	15	12	35	1.86
16170--16218	24	2.0	24	96	0	89	22	8	22	46	1.77
16755--17036	151	1.9	150	84	9	387	28	13	16	41	1.86
18305--18332	3	9.3	3	100	0	56	64	0	0	35	0.94
18458--19131	354	1.9	351	87	3	980	37	10	14	38	1.79
24383--24811	78	5.5	78	88	2	592	22	17	26	33	1.97
24323--24803	156	3.1	156	88	0	651	22	17	26	33	1.96
29404--29443	2	20.0	2	100	0	80	50	0	0	50	1.00
32689--32746	31	1.9	29	86	6	80	70	1	25	1	1.06
33098--33232	66	2.0	67	84	7	173	32	11	20	35	1.88
34725--34772	20	2.6	18	87	12	78	39	16	4	39	1.68
34730--34769	20	2.0	20	100	0	80	40	20	5	35	1.74
38598--38631	2	17.0	2	100	0	68	50	0	0	50	1.00
42467--42554	42	2.1	42	97	0	167	35	0	28	36	1.58
42523--42563	12	3.2	12	80	12	55	34	0	24	41	1.55
45392--45443	24	2.1	25	89	3	79	30	25	11	32	1.91
45736--45778	11	3.9	11	84	0	59	13	23	23	39	1.90
46932--46979	24	2.0	25	87	4	71	31	22	12	33	1.91
50041--50195	80	1.9	80	96	0	283	27	18	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50364--50411	9	5.3	9	100	0	96	22	10	22	43	1.84
53205--53237	16	2.1	16	94	0	57	42	21	6	30	1.77
65432--65475	13	3.6	12	82	14	54	0	18	4	77	0.94

Tables:   1

The End!