Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023062.1 Corchorus olitorius cultivar O-4 contig23095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10924
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:4749 original size:16 final size:18

Alignment explanation


    Indices: 4715--4749  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       4705 CTCCTCTATC

                              
       4715 ATGAAAACACTTCTTTTT
          1 ATGAAAACACTTCTTTTT

                              
       4733 ATGAAAACA-TT-TTTTT
          1 ATGAAAACACTTCTTTTT

             
       4749 A
          1 A

       4750 ATTACCCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    6  0.35
  17    2  0.12
  18    9  0.53

ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46


Consensus pattern (18 bp):   
ATGAAAACACTTCTTTTT

Found at i:8198 original size:19 final size:18

Alignment explanation


    Indices: 8174--8209  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       8164 TGAAGATTTA

                               
       8174 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                    *        
       8193 TTGAAGACCATTGAAGA
          1 TTGAAGACAATTGAAGA

       8210 ATTATTTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT
Done.