Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023064.1 Corchorus olitorius cultivar O-4 contig23097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72112

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2823--2860
20
1.9
20
88
0
58
47
2
18
31
1.62
4584--4637
19
2.6
21
77
19
60
38
18
3
38
1.69
8148--8299
76
2.0
76
82
7
184
17
29
28
24
1.97
16249--16453
29
7.0
30
80
9
97
43
22
16
17
1.87
16272--16456
29
6.4
29
86
2
255
43
22
16
17
1.88
21226--21258
14
2.4
14
90
5
50
51
33
9
6
1.58
23782--23850
15
4.7
15
70
12
54
46
10
7
36
1.65
24216--24248
12
2.5
13
90
9
50
36
0
15
48
1.45
28568--28619
15
3.4
15
91
2
77
63
11
9
15
1.52
37256--37295
15
2.6
16
88
4
55
62
12
10
15
1.54
41792--41830
2
19.5
2
100
0
78
48
0
0
51
1.00
51829--51865
9
4.2
9
86
6
58
0
21
0
78
0.75
55284--55628
178
1.9
178
83
4
446
33
13
17
35
1.89
56602--56656
26
2.0
27
86
10
76
49
27
10
12
1.74
59220--59262
20
2.2
20
84
8
54
53
0
2
44
1.13
59210--59309
17
6.3
17
72
19
58
48
0
3
49
1.16
63531--66360
662
4.3
657
78
8
2619
33
14
15
36
1.88
63544--66180
994
2.7
980
79
7
2739
33
14
15
36
1.88
63531--66429
333
8.8
328
78
7
2501
33
14
15
37
1.88
66901--66979
31
2.5
31
79
2
86
15
21
26
36
1.93
67769--67800
16
2.0
16
93
0
55
3
18
34
43
1.66
70906--70944
19
2.1
19
95
0
69
35
30
0
33
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71058--71131
33
2.2
34
83
7
98
10
41
40
6
1.66

Tables:   1

The End!