Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023065.1 Corchorus olitorius cultivar O-4 contig23098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76090

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3369--3393
12
2.1
12
100
0
50
76
0
0
24
0.80
3857--3922
31
2.1
31
100
0
132
40
16
22
19
1.91
5962--6022
30
2.0
31
87
3
88
37
18
9
34
1.83
6550--6608
30
2.0
30
86
0
82
16
37
33
11
1.86
6580--6654
33
2.3
33
90
0
114
18
41
33
6
1.77
17155--17230
31
2.5
31
82
4
91
31
10
17
40
1.83
20895--20937
22
1.9
23
85
4
61
18
4
25
51
1.66
20953--20995
14
3.1
14
89
0
68
46
2
2
48
1.27
28345--28376
15
2.2
15
94
5
57
53
12
9
25
1.68
42594--42697
46
2.2
46
94
1
181
35
22
11
30
1.89
66181--66679
252
2.0
252
90
2
786
28
23
21
27
1.99
66826--66853
2
14.0
2
100
0
56
50
0
0
50
1.00
71572--71625
28
2.0
27
85
10
74
12
9
27
50
1.71
74188--74528
178
1.9
178
83
5
449
34
13
16
35
1.89
75347--75460
11
10.8
11
69
12
69
51
1
3
42
1.29
75576--75600
10
2.5
10
100
0
50
52
16
8
24
1.70

Tables:   1

The End!