Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023068.1 Corchorus olitorius cultivar O-4 contig23101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21679

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
492--783
166
1.8
162
83
9
395
36
10
7
45
1.66
1002--1209
22
9.5
21
70
7
128
37
10
16
35
1.83
998--1172
66
2.6
65
82
5
208
35
10
17
36
1.85
1092--1318
122
1.9
121
80
9
264
37
10
16
35
1.83
1214--1634
22
19.6
22
66
18
108
38
10
16
35
1.82
1452--1604
82
1.9
83
83
1
200
39
9
18
32
1.82
1452--1604
22
7.2
22
75
10
120
39
9
18
32
1.82
1600--1642
22
2.0
22
85
0
59
34
16
16
32
1.91
2428--2483
22
2.5
22
85
0
76
10
10
50
28
1.71
6972--7012
7
5.9
7
100
0
82
26
43
0
29
1.55
15406--15463
27
2.1
27
83
0
71
32
32
1
32
1.68
16527--16733
108
1.9
110
87
5
305
42
21
14
21
1.88
16922--16948
2
13.5
2
100
0
54
48
0
0
51
1.00
19149--19197
25
2.0
25
95
0
89
36
20
30
12
1.89
20082--20212
33
4.0
33
84
2
174
11
33
36
18
1.87

Tables:   1

The End!