Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023071.1 Corchorus olitorius cultivar O-4 contig23104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9075
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:572 original size:19 final size:19

Alignment explanation


    Indices: 548--592  Score: 65
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        538 TACTTATATA

                                
        548 AATAATTAATCAAT-TATTG
          1 AATAATTAAT-AATGTATTG

                       *       
        567 AATAATTAATAGTGTATTG
          1 AATAATTAATAATGTATTG

                   
        586 AATAATT
          1 AATAATT

        593 TTCCATACAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  18    2  0.08
  19   22  0.92

ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42


Consensus pattern (19 bp):   
AATAATTAATAATGTATTG
Done.