Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023075.1 Corchorus olitorius cultivar O-4 contig23108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34613

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
313--471
33
4.8
33
82
4
187
17
32
33
16
1.92
291--471
66
2.8
67
83
5
212
17
32
34
16
1.92
312--494
33
5.5
33
81
5
183
16
32
33
17
1.93
625--688
21
3.0
21
95
0
110
10
18
35
34
1.86
2274--2330
18
3.2
18
92
5
89
43
22
28
5
1.75
2274--2430
65
2.4
64
86
4
208
47
19
26
6
1.73
2337--2397
18
3.4
18
79
4
70
49
18
24
8
1.74
2538--2569
13
2.5
13
94
0
55
37
34
12
15
1.85
2609--2736
42
3.0
42
83
3
159
24
17
39
19
1.92
2607--2701
13
6.9
13
69
23
70
22
17
42
17
1.90
7375--7421
6
7.8
6
92
0
58
8
34
17
40
1.79
7375--7425
18
2.8
18
84
0
66
9
33
17
39
1.83
9901--9986
3
29.0
3
97
2
165
33
0
0
66
0.92
10548--10624
22
3.5
22
83
1
84
41
10
7
40
1.68
14142--14180
3
13.0
3
100
0
78
66
0
0
33
0.92
14906--14947
21
2.0
21
86
9
59
59
2
0
38
1.10
16183--16279
45
2.2
45
88
1
142
40
19
5
35
1.74
17839--18167
84
3.9
84
95
1
588
42
25
10
20
1.84
17839--18167
167
2.0
169
95
1
590
42
25
10
20
1.84
17839--18167
43
7.8
42
86
6
461
42
25
10
20
1.84
19036--19095
23
2.6
23
91
0
102
45
20
16
18
1.86
30672--31001
41
7.8
41
84
10
400
43
26
10
20
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30672--30995
43
7.7
42
81
8
381
43
26
9
20
1.83
30672--31001
84
3.9
84
93
2
563
43
26
10
20
1.83
31112--31160
2
25.0
2
91
4
73
48
4
0
46
1.20
31705--31736
16
2.0
16
100
0
64
18
25
25
31
1.98
31906--31962
23
2.5
23
97
0
105
45
22
14
17
1.84
32694--32820
45
2.8
45
91
0
218
40
19
6
33
1.77
34002--34095
45
2.2
43
85
11
122
38
21
5
35
1.76

Tables:   1

The End!