Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023077.1 Corchorus olitorius cultivar O-4 contig23110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48059

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5804--6091
43
6.8
42
87
3
409
22
10
25
41
1.86
5804--6091
84
3.4
84
89
3
409
22
10
25
41
1.86
5804--6091
127
2.3
127
91
3
456
22
10
25
41
1.86
8240--8272
15
2.1
17
88
11
52
9
15
36
39
1.79
11386--11422
2
18.5
2
100
0
74
51
0
0
48
1.00
13627--13683
25
2.4
25
82
5
64
59
3
5
31
1.36
15455--15485
15
2.1
15
100
0
62
61
12
6
19
1.53
15513--15547
14
2.5
14
90
0
61
68
0
8
22
1.16
15990--16020
15
2.1
15
100
0
62
61
12
6
19
1.53
16048--16082
14
2.5
14
90
0
61
68
0
8
22
1.16
15244--16311
535
2.0
535
100
0
2136
49
9
9
31
1.68
16359--16409
25
2.1
25
82
7
61
47
1
7
43
1.43
19119--19144
13
2.0
13
100
0
52
46
0
15
38
1.46
45389--45585
102
1.9
102
86
0
277
23
26
28
21
1.99
45546--45636
31
2.9
31
93
3
146
26
18
29
25
1.98

Tables:   1

The End!