Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023078.1 Corchorus olitorius cultivar O-4 contig23111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84218

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7615--7731
58
2.0
58
94
0
207
32
7
8
51
1.61
7807--7904
32
3.0
32
73
8
108
28
16
23
31
1.96
7793--7892
33
3.1
33
74
8
123
25
18
21
36
1.95
11281--11323
19
2.3
19
100
0
86
44
4
0
51
1.22
11276--11320
19
2.7
16
78
21
56
46
4
0
48
1.22
11654--11710
25
2.4
24
88
5
80
59
3
5
31
1.36
16285--16331
23
2.0
23
100
0
94
42
21
8
27
1.81
20227--20254
1
28.0
1
100
0
56
0
0
0
100
0.00
39473--39551
37
2.1
37
88
0
113
27
6
24
41
1.79
53337--53363
4
6.8
4
100
0
54
74
0
0
25
0.83
55531--55566
5
7.2
5
87
0
54
2
22
0
75
0.94
55531--55578
20
2.3
22
89
7
73
2
27
0
70
0.98
70171--70242
36
2.2
31
75
20
74
18
16
47
18
1.83
70182--70264
36
2.3
36
93
0
139
15
16
50
16
1.78
74924--74983
3
20.0
3
81
6
59
26
1
41
30
1.65
74903--74983
21
3.9
21
87
6
94
25
1
40
32
1.64
74937--74983
18
2.6
19
90
6
71
25
2
42
29
1.67
77822--77871
25
2.0
25
100
0
100
8
44
4
44
1.52
78441--78481
19
2.2
19
90
0
64
34
4
14
46
1.66
78471--78511
21
2.0
21
95
0
73
31
0
21
46
1.52
80079--80112
16
2.1
16
100
0
68
32
17
26
23
1.97

Tables:   1

The End!