Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023084.1 Corchorus olitorius cultivar O-4 contig23117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4155
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32


Found at i:3642 original size:58 final size:58

Alignment explanation


    Indices: 3541--3653  Score: 156
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       3531 ATTAATCAAA

                                       *                  *           
       3541 TATCAAGTGACATGGTCTTTATTAGATGCATAAAAACAGACGTTTTCGGACCGAGACT
          1 TATCAAGTGACATGGTCTTTATTAGATACATAAAAACAGACGTTTTAGGACCGAGACT

                *          * *            *                         
       3599 TATCGAGTGACATGTTTTTTTATTAGATACCTAAAAA-AGACGTTTTAGGACCGAG
          1 TATCAAGTGACATG-GTCTTTATTAGATACATAAAAACAGACGTTTTAGGACCGAG

       3654 GCATGATGCT


Statistics
Matches: 48,  Mismatches: 6, Indels: 2
        0.86            0.11        0.04

Matches are distributed among these distances:
  58   30  0.62
  59   18  0.38

ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Consensus pattern (58 bp):   
TATCAAGTGACATGGTCTTTATTAGATACATAAAAACAGACGTTTTAGGACCGAGACT
Done.