Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023085.1 Corchorus olitorius cultivar O-4 contig23118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17667

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
766--835
36
1.9
36
91
0
113
21
10
8
60
1.55
1337--1746
204
2.0
201
94
1
712
43
8
10
36
1.70
1821--1867
25
1.9
24
91
4
76
55
6
6
31
1.51
2161--2254
45
2.2
43
83
7
120
36
22
5
36
1.77
2863--2908
22
2.0
23
84
12
60
58
13
2
26
1.46
8708--8865
32
4.9
32
83
3
201
29
20
18
31
1.97
8676--8865
64
3.0
64
80
6
224
30
21
18
30
1.97
11469--11515
21
2.2
22
78
17
55
40
4
27
27
1.75
11483--11522
21
1.9
21
100
0
80
42
5
27
25
1.75
15381--15428
24
2.0
25
83
4
62
14
6
8
70
1.31
15582--15675
33
2.9
32
79
6
100
14
29
11
43
1.81
15611--15691
33
2.5
33
83
0
90
13
29
16
40
1.86
16141--16215
36
2.0
37
89
5
116
45
37
2
14
1.59

Tables:   1

The End!