Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023086.1 Corchorus olitorius cultivar O-4 contig23119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20592

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1793--1873
22
3.7
22
74
9
76
34
9
17
38
1.83
1993--2107
21
5.4
22
70
17
73
33
8
17
40
1.80
1982--2062
40
2.0
40
83
7
101
34
6
19
39
1.77
2046--2103
22
2.6
22
87
12
84
31
8
17
43
1.79
2146--2377
22
10.5
22
74
9
127
41
9
15
33
1.80
2146--2377
88
2.6
86
78
9
227
41
9
15
33
1.80
2477--3037
22
25.7
21
67
13
199
39
9
15
35
1.81
3005--3054
22
2.3
22
79
6
57
52
8
14
26
1.68
4066--4122
24
2.4
25
77
16
66
3
36
1
57
1.26
5660--5691
10
3.2
10
90
0
55
0
40
0
59
0.97
8992--9189
97
2.0
97
93
0
333
30
20
18
30
1.97
14313--14337
10
2.5
10
100
0
50
32
8
16
44
1.76
15318--15500
28
6.5
28
83
5
217
16
18
26
39
1.91
15318--15473
58
2.7
57
85
2
215
16
17
26
40
1.90
15318--15500
86
2.2
83
87
5
260
16
18
26
39
1.91
16820--16852
16
2.1
16
94
0
57
30
24
24
21
1.99
18273--18297
9
2.8
9
100
0
50
48
0
20
32
1.50

Tables:   1

The End!