Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023090.1 Corchorus olitorius cultivar O-4 contig23123, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2655
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:735 original size:24 final size:23

Alignment explanation


    Indices: 688--735  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        678 ATTAAATTTC

                             ***   
        688 AAAAAAATTGCACAATATTTAAT
          1 AAAAAAATTGCACAATAGAAAAT

                                    
        711 AAAAAAATTGCACAATTAGAAAAT
          1 AAAAAAATTGCACAA-TAGAAAAT

             
        735 A
          1 A

        736 GTATTATATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  23   15  0.71
  24    6  0.29

ACGTcount: A:0.60, C:0.08, G:0.06, T:0.25


Consensus pattern (23 bp):   
AAAAAAATTGCACAATAGAAAAT
Done.