Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023093.1 Corchorus olitorius cultivar O-4 contig23126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22931

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44--78
15
2.3
15
95
0
61
8
14
25
51
1.70
1239--1311
26
2.7
27
77
12
87
24
24
12
38
1.90
1288--1568
51
5.5
51
94
0
483
25
27
11
35
1.90
1796--2030
64
3.6
64
87
3
310
29
22
13
34
1.92
4077--4101
12
2.1
12
100
0
50
24
0
16
60
1.36
4388--4446
14
4.3
13
87
10
66
38
16
6
37
1.76
5602--5691
44
2.1
42
83
4
108
42
10
23
24
1.84
7263--7349
36
2.6
33
86
12
117
22
16
8
52
1.69
7394--7442
25
2.0
25
88
11
75
8
12
6
73
1.24
7979--8349
41
9.1
41
84
3
399
48
14
13
24
1.79
12561--12595
15
2.3
15
95
0
61
8
14
25
51
1.70
13453--13551
27
3.7
26
74
8
83
38
28
16
17
1.91
14885--14990
52
2.0
52
96
0
194
28
18
11
41
1.85
18559--19044
60
8.1
59
76
11
405
9
25
21
43
1.82
18559--19044
123
4.0
119
80
8
491
9
25
21
43
1.82
19966--20078
45
2.5
45
98
0
217
11
27
29
31
1.92
19994--20064
21
3.2
21
63
18
54
12
26
28
32
1.93

Tables:   1

The End!