Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023096.1 Corchorus olitorius cultivar O-4 contig23129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18974

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--34
2
17.0
2
100
0
68
50
0
0
50
1.00
582--640
26
2.3
26
82
5
75
40
10
16
32
1.82
2239--2306
26
2.6
26
86
4
93
44
5
17
32
1.73
4333--4410
20
3.8
20
75
9
68
46
1
8
43
1.43
4333--4410
41
1.9
41
83
0
102
46
1
8
43
1.43
4437--4490
20
2.8
20
82
2
65
46
11
5
37
1.63
4527--4624
21
4.6
21
73
12
58
48
8
11
31
1.68
4736--4789
20
2.7
20
76
2
54
48
1
12
37
1.53
6315--6349
16
2.2
16
100
0
70
45
17
25
11
1.81
6445--6808
41
8.9
41
88
2
426
37
17
14
30
1.90
7483--7507
2
12.5
2
100
0
50
52
0
0
48
1.00
8586--8615
4
7.5
4
100
0
60
23
0
0
76
0.78
10089--10113
13
1.9
13
100
0
50
44
0
0
56
0.99
11777--11841
34
1.9
33
84
3
85
29
26
15
29
1.96
13997--14043
23
2.0
23
95
0
85
46
25
2
25
1.64
16790--16834
21
2.1
21
87
0
63
31
31
22
15
1.95

Tables:   1

The End!