Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023097.1 Corchorus olitorius cultivar O-4 contig23130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24593

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1220--1249
13
2.4
12
94
5
51
83
3
6
6
0.90
3913--3970
30
2.0
29
96
3
107
13
3
17
65
1.40
4518--4550
12
2.8
12
90
0
57
72
0
3
24
0.98
4581--4623
13
3.2
13
83
6
50
0
25
0
74
0.82
6295--6339
19
2.5
18
85
7
56
0
22
0
77
0.76
13252--13307
15
3.6
15
75
13
51
17
3
35
42
1.67
13246--13341
32
3.0
33
81
6
99
18
8
34
38
1.81
13268--13333
16
4.1
17
72
16
59
19
6
31
42
1.76
13515--13560
22
2.1
22
87
0
65
10
8
28
52
1.66
14920--15033
57
2.0
57
84
0
147
16
14
18
50
1.79
16611--16667
11
5.0
11
74
16
53
0
21
5
73
1.02
16611--16667
24
2.5
21
78
13
60
0
21
5
73
1.02
21254--21279
11
2.4
11
100
0
52
7
15
7
69
1.35
22043--22080
15
2.5
15
95
4
67
13
13
13
60
1.59
22895--22921
13
2.1
13
100
0
54
40
22
7
29
1.81

Tables:   1

The End!