Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023101.1 Corchorus olitorius cultivar O-4 contig23134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99754

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6824--6960
69
2.0
69
89
2
213
21
13
15
48
1.79
22086--22137
21
2.5
21
83
0
59
21
25
25
28
1.99
23908--23957
21
2.3
20
80
12
55
40
0
28
32
1.57
26501--26549
21
2.3
21
82
6
55
14
28
16
40
1.87
29235--29386
76
2.0
76
82
7
184
17
29
28
24
1.97
37064--37103
21
1.9
21
85
10
55
30
22
27
20
1.98
39212--39266
21
2.6
21
83
13
60
12
3
41
41
1.60
53660--53700
2
21.5
2
81
18
52
51
2
0
46
1.14
53835--53890
29
1.9
29
96
0
103
21
3
30
44
1.69
55325--55355
15
2.1
15
93
0
53
48
0
9
41
1.36
56788--56812
11
2.3
11
100
0
50
48
16
0
36
1.46
63506--63687
99
1.9
97
83
4
240
45
12
5
36
1.66
63653--63787
40
3.3
40
68
15
107
47
13
4
34
1.63
63630--63886
80
3.0
80
80
13
264
45
12
5
36
1.65
63712--63923
95
2.3
94
85
4
270
44
12
6
36
1.68
65537--66437
445
2.0
446
97
0
1687
29
17
19
33
1.95
70175--70946
169
4.6
167
88
3
1056
35
16
18
29
1.94
70175--70948
337
2.3
340
86
4
1124
35
16
18
29
1.94
73614--73653
15
2.6
16
92
4
64
65
12
10
12
1.49
74413--74438
11
2.4
11
100
0
52
69
7
15
7
1.35
75875--75915
2
20.5
2
94
0
73
48
0
2
48
1.14
76028--76358
43
7.8
42
84
8
422
21
10
25
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76029--76358
84
3.9
84
94
2
565
21
10
25
42
1.85
81976--82065
30
2.8
31
83
10
110
38
12
7
41
1.71
81967--82074
30
3.2
32
80
17
105
42
10
8
38
1.69
82075--82129
26
2.0
28
89
6
87
43
12
9
34
1.74
82538--82577
15
2.6
16
92
4
64
65
12
10
12
1.49
89417--89445
15
1.9
15
100
0
58
34
13
17
34
1.89
91291--91322
14
2.3
14
100
0
64
31
6
34
28
1.82
95119--95147
6
5.0
6
95
4
51
34
17
0
48
1.47
98726--98751
4
6.5
4
100
0
52
76
0
0
23
0.78

Tables:   1

The End!