Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023102.1 Corchorus olitorius cultivar O-4 contig23135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3418
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30


Found at i:2644 original size:3 final size:3

Alignment explanation


    Indices: 2638--2726  Score: 178
    Period size: 3  Copynumber: 29.7  Consensus size: 3

       2628 AAAAAAAATA

                                                                           
       2638 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

                                                                  
       2686 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

       2727 GTGGGCCTGG


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   86  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Found at i:2764 original size:4 final size:4

Alignment explanation


    Indices: 2747--2779  Score: 52
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       2737 CCCGAAAAAA

                                                       
       2747 AAAT -AAT AAA- AAAT AAAT AAAT AAAT AAAT AAA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA

       2780 AGAAAAAGAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   3    6  0.22
   4   21  0.78

ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21


Consensus pattern (4 bp):   
AAAT

Done.