Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023109.1 Corchorus olitorius cultivar O-4 contig23142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6489
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:1084 original size:16 final size:15

Alignment explanation


    Indices: 1046--1087  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1036 ACAGAGATTG

                   *       
       1046 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

            *              
       1061 GCAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       1076 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1088 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.62, C:0.14, G:0.12, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.