Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023110.1 Corchorus olitorius cultivar O-4 contig23143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30


Found at i:354 original size:25 final size:24

Alignment explanation


    Indices: 295--342  Score: 69
    Period size: 25  Copynumber: 2.0  Consensus size: 24

        285 AGGAACAAGA

                                *   
        295 AATTTTTTTTTTATGACGCAGAAT
          1 AATTTTTTTTTTATGACGCAAAAT

                              *     
        319 CAATTTTTTTTTTATGACTCAAAA
          1 -AATTTTTTTTTTATGACGCAAAA

        343 ATATTTGTTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.31, C:0.10, G:0.08, T:0.50


Consensus pattern (24 bp):   
AATTTTTTTTTTATGACGCAAAAT

Found at i:770 original size:16 final size:15

Alignment explanation


    Indices: 732--773  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        722 ACAGAGATTG

                   *       
        732 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                            
        747 ACAGAAAACAATTAAA
          1 ACAGAAAACAATT-AA

             *         
        763 ATAGAAAACAA
          1 ACAGAAAACAA

        774 AGCAAAGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   12  0.50
  16   12  0.50

ACGTcount: A:0.67, C:0.12, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.