Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023119.1 Corchorus olitorius cultivar O-4 contig23152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40316

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1201--1275
37
2.0
37
97
0
141
28
13
17
41
1.87
1799--1869
29
2.6
27
84
13
92
45
26
11
16
1.82
1799--1869
26
2.6
27
86
10
92
45
26
11
16
1.82
9660--9754
20
4.8
20
79
5
102
28
2
47
22
1.63
9658--9754
40
2.4
40
92
0
167
27
3
46
22
1.67
11513--11588
37
2.1
37
100
0
152
44
21
10
23
1.83
11759--11834
28
2.7
28
87
4
109
38
25
17
19
1.93
13627--13934
54
5.9
54
77
9
289
37
9
27
25
1.87
13743--13933
98
1.9
99
87
4
278
37
9
27
25
1.87
20295--20381
29
3.0
29
76
6
97
45
34
8
11
1.70
26409--26478
2
37.5
2
80
13
69
47
1
1
50
1.19
28134--28206
31
2.4
31
76
4
85
24
4
10
60
1.48
28170--28218
24
2.2
21
82
10
53
30
2
8
59
1.38
28685--28724
16
2.5
16
87
0
53
52
35
5
7
1.51
29009--29046
16
2.4
16
90
0
67
10
26
36
26
1.89
30989--31015
7
3.9
7
100
0
54
29
14
14
40
1.86
33588--33625
2
19.5
2
94
5
69
50
0
0
50
1.00
33624--33653
3
10.0
3
92
0
51
36
30
0
33
1.58
34210--34249
21
1.9
21
100
0
80
22
5
17
55
1.61
34578--34605
14
2.0
14
100
0
56
35
42
14
7
1.73
36883--36941
23
2.5
23
86
8
75
49
6
0
44
1.29
36871--37005
55
2.4
55
85
8
177
48
7
0
43
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36944--36993
23
2.1
25
89
10
79
48
10
0
42
1.37
37436--37527
21
4.4
21
93
2
134
29
19
25
26
1.99

Tables:   1

The End!