Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023120.1 Corchorus olitorius cultivar O-4 contig23153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6378
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:801 original size:18 final size:15

Alignment explanation


    Indices: 756--820  Score: 103
    Period size: 15  Copynumber: 4.3  Consensus size: 15

        746 TGCTAGGGTG

                    *      
        756 AATGGTGCAAACAAC
          1 AATGGTGCGAACAAC

                           
        771 AATGGTGCGAACAAC
          1 AATGGTGCGAACAAC

                           
        786 AATGGTGCGAACAAC
          1 AATGGTGCGAACAAC

                   *      *
        801 AATGGTGTGAACAAT
          1 AATGGTGCGAACAAC

                 
        816 AATGG
          1 AATGG

        821 AAATGGTGCA


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   47  1.00

ACGTcount: A:0.42, C:0.15, G:0.26, T:0.17


Consensus pattern (15 bp):   
AATGGTGCGAACAAC
Done.