Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023127.1 Corchorus olitorius cultivar O-4 contig23160, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27


Found at i:869 original size:17 final size:16

Alignment explanation


    Indices: 794--870  Score: 93
    Period size: 17  Copynumber: 4.8  Consensus size: 16

        784 AATTTTGGGT

                      *    *
        794 ACCCGAACCCGAAATT
          1 ACCCGAACCCAAAATG

                   *        
        810 ACCCGAATCC-AAATG
          1 ACCCGAACCCAAAATG

                             
        825 ACCCGAACCCGAAAATG
          1 ACCCGAACCC-AAAATG

                *            
        842 ACCCAAACCCAAAAATG
          1 ACCCGAACCC-AAAATG

                        
        859 ACCCGAACCCAA
          1 ACCCGAACCCAA

        871 TCAACCCGAC


Statistics
Matches: 53,  Mismatches: 6, Indels: 4
        0.84            0.10        0.06

Matches are distributed among these distances:
  15   13  0.25
  16   11  0.21
  17   29  0.55

ACGTcount: A:0.43, C:0.38, G:0.12, T:0.08


Consensus pattern (16 bp):   
ACCCGAACCCAAAATG
Done.