Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023128.1 Corchorus olitorius cultivar O-4 contig23161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3213
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28


Found at i:769 original size:16 final size:16

Alignment explanation


    Indices: 739--783  Score: 58
    Period size: 15  Copynumber: 2.9  Consensus size: 16

        729 TATAACTCGA

                *           
        739 AACCGAAAATGACCC-
          1 AACCCAAAATGACCCG

                             
        754 AACCCAAAATTGACCCG
          1 AACCCAAAA-TGACCCG

                          
        771 AACCC-AAATGACC
          1 AACCCAAAATGACC

        784 TGACATTTGA


Statistics
Matches: 27,  Mismatches: 1, Indels: 4
        0.84            0.03        0.12

Matches are distributed among these distances:
  15   13  0.48
  16    9  0.33
  17    5  0.19

ACGTcount: A:0.44, C:0.36, G:0.11, T:0.09


Consensus pattern (16 bp):   
AACCCAAAATGACCCG

Done.